On branching process with rare neutral mutation

Modeling Neutral Evolution Using an Infinite-Allele Markov Branching Process

We consider an infinite-allele Markov branching process (IAMBP). Our main focus is the frequency spectrum of this process, that is, the proportion of alleles having a given number of copies at a specified time point. We derive the variance of the frequency spectrum, which is useful for interval estimation and hypothesis testing for process parameters. In addition, for a class of special IAMBP w...

A limit theorem for trees of alleles in branching processes with rare neutral mutations

We are interested in the genealogical structure of alleles for a Bienaymé-Galton-Watson branching process with neutral mutations (infinite alleles model), in the situation where the initial population is large and the mutation rate small. We shall establish that for an appropriate regime, the process of the sizes of the allelic sub-families converges in distribution to a certain continuous stat...

Mutation in populations governed by a Galton-Watson branching process.

A population genetics model based on a multitype branching process, or equivalently a Galton-Watson branching process for multiple alleles, is presented. The diffusion limit forward Kolmogorov equation is derived for the case of neutral mutations. The asymptotic stationary solution is obtained and has the property that the extant population partitions into subpopulations whose relative sizes ar...

Mutation frequencies in a birth-death branching process

First, we revisit a classic two-type branching process which describes cell proliferation and mutation; widespread application has been seen in cancer and microbial modelling. As the mutation rate tends to zero and the population size to infinity, the mutation times converge to a Poisson process. This yields the number of mutants and clone sizes. Other limits and exact results are also explored...

Replication and Mutation on Neutral